Biomechanics of acceleration in fishes

How do fish accelerate? Many researchers have studied the biomechanics of steady swimming, but there is much less known about acceleration, even though most fishes rarely swim steadily. In this project, we will be training to fish to accelerate rapidly toward a wand to receive a food reward. We will use high speed video from several angles to digitize the motion in 3D using a machine learning algorithm.

Our goal will be to compare acceleration performance in pumpkinseed and bluegill sunfish. We have previously studied bluegill. Pumpkinseed are closely related, live in similar environments, but seem to swim differently - and perhaps more efficiently. We aim to determine if these differences extend to acceleration behavior.

Name of research group, project, or lab
Tytell Lab
Why join this research group or lab?

We study fish, which are cool! We even go on fishing trips as a lab! The lab group has 3 PhD students, 1 MS student, and 4 current undergraduate researchers. We are a collaborative group that works together on many different projects, and we also collaborate with roboticists and applied mathematicians regularly. The lab environment is perfect for individuals who want to practice thinking critically, are willing to learn new techniques and software, and want to have fun while doing cool science! The lab integrates approaches from several different disciplines including  physiology, biomechanics, neurobiology, functional morphology, fluid dynamics, and engineering. We mostly answer questions about fish swimming, and we study fish swimming at multiple levels: inside of the fish (muscles, bones, sensory systems), the whole fish (fin and body kinematics), and the interaction of the fluid and the fish (fluid dynamics). We even use models such as flapping foils, soft robotics, or computer simulations to answer questions about fish swimming! 

Our work is important to understand how all animals move, including humans. It can help us understand the diversity of animal life, and can help to design better underwater robots. It also has implications for therapies for  spinal cord injury and other human movement disorders.

Logistics Information:
Project categories
Physiology, Neurobiology, and Biomechanics
Student ranks applicable
2nd year undergraduate
3rd year undergraduate
Masters
Student qualifications

Students should have taken Bio 14 "Organisms and Populations" and mechanics (Phys 1 or 11 or equivalent). Preference will be given to students who have taken upper level physiology courses (such as Bio 49, 75, 115, or 116). Experience with coding is a plus.

We prefer students who can commit to spending multiple summers or semesters working in the lab.

In your application, please

  1. Explain your motivation, what you hope to gain from the experience, and current career plans
  2. List your relevant courses, grades, and experience
Hours per week
10-15hrs/wk
Compensation
Unpaid - Volunteer
Number of openings
1
Techniques learned

Students will gain experience with

  • Fish husbandry, care and training
  • Anatomy and dissection of fish
  • High speed video
  • Machine learning techniques for tracking and processing video data
  • Data analysis and visualization using R or Python

Depending on how successful the project is, we may move on to quantifying muscle activity or fluid flow patterns, in which case students would learn either surgical methods for fish or some techniques for quantifying fluid flow around animals.

 
Project start
Summer 2025
This project will use an Expectations and Structure agreement.
Expectations and Structure

This project is designed to foster a collaborative and intellectually engaging environment where both the mentor and student contribute to advancing biomechanical studies of swimming in fishes. Students are expected to commit 10 or more hours per week (to be agreed upon) to independent work, including lab setup and experiments, data analysis, and literature review. 

Students must maintain good records of their experiments and data analysis on LabArchives and ensure that all data are documented and backed up. I will provide training in best practices for record keeping and data management.

Students will be expected to contribute to lab maintenance, which will include cleaning and organizing in the lab and contributing to caring for the fish.

I expect students to attend and participate in our weekly summer lab meeting (time to be determined), which will include paper discussions, guest speakers, workshops, and occasional field trips. Regular weekly meetings (either in-person or virtual) will be scheduled to discuss progress, troubleshoot challenges, and set goals for the following week. In addition to these meetings, students should maintain consistent communication via Slack for quick updates and questions.

Contact Information:
Mentor
Eric.Tytell@tufts.edu
Name of project director or principal investigator
Eric Tytell
Email address of project director or principal investigator
eric.tytell@tufts.edu
1 sp. | 1 appl.
Hours per week
10-15hrs/wk
Project categories
Physiology, Neurobiology, and Biomechanics