Quantifying muscle anatomy in elongate fishes

My research focuses on the functional role of the caudal fin (the tail) in fishes, particularly in elongate (eel-like) fishes. Many elongate fishes have small caudal fins, but they are not entirely absent. In this project, we will quantify the muscular anatomy of the caudal fin to understand how much they can move the fin and rays actively.

Students will mainly be working on the computer to analyze CT scans of fishes to quantify the size and shape of different muscles that control the tail fin. There will be some dissection of preserved specimens. 

Name of research group, project, or lab
Tytell Lab
Why join this research group or lab?

One of the best parts of working in the Tytell lab is that you will always be surrounded by kind, curious, and supportive people. The lab environment is perfect for individuals who want to practice thinking critically, are willing to learn new techniques and software, and want to have fun while doing cool science! The lab integrates approaches from several different disciplines including but not limited to: physiology, biomechanics, neurobiology, functional morphology, fluid dynamics, and engineering. We mostly answer questions about fish swimming, and we study fish swimming at multiple levels: inside of the fish (muscles, bones, sensory systems), the whole fish (fin and body kinematics), and the interaction of the fluid and the fish (fluid dynamics). We even use models such as flapping foils, soft robotics, or computer simulations to answer questions about fish swimming! 

Studying fish swimming is important for many reasons! Overall, fishes are great models for understanding evolutionary patterns as they are the most diverse vertebrates on the planet. We can assess how differences in muscles and muscle use, sensory systems, skeletal anatomy, body and fin shape, or behavior impact swimming performance, and why that matters for different groups of fishes. From an ecological standpoint, understanding how fishes swim sense their environment may tell us more about why they inhabit certain environments over others. It also allows us to predict how their dispersal may be affected by climate change and human-induced changes to their environments which has implications for conservation of ecologically and economically important species. Fishes are also common sources of bioinspiration for engineers aiming to improve the efficiency and maneuverability of autonomous underwater vehicles. Current designs of AUVs are far less efficient than fishes, so a better understanding of fish sensory systems and motor control is critical to inspire better technology. 

Some recent and ongoing research in the lab includes: 

  • Understanding the role of the fins and body during turning, deceleration, and acceleration.
  • Investigating caudal fin use during vertical swimming.
  • Testing the use of vertical optomotor responses in fishes to induce vertical swimming.
  • Understanding the role of vision and the lateral line in schooling behavior of different species of tropical fishes.
  • Describing lateral line morphology in schooling fishes.
  • Describing the skeletal and muscular morphology of the caudal fins in elongate fishes.
  • Understanding the role of the caudal fin shape on passive bending and thrust generation of elongate foils.
  • Investigating how the flexibility of fish bodies influences swimming performance. 

 

The proposed summer project is to study functional role of the caudal fin (the tail) in fishes, particularly in elongate (eel-like) fishes. Nearly all fishes have tails, and for many fishes, the tail plays an important role in steady swimming and unsteady maneuvers such as turning. In elongate fishes, the role of the tail during swimming and its anatomy is not well-understood as most fins are small and therefore commonly understudied. We will use representatives from a group of elongate fishes that live in different habitats in the Pacific North-west to compare muscle presence, shape, and attachment to predict active vs passive use of the tail during swimming. 

Logistics Information:
Project categories
Physiology, Neurobiology, and Biomechanics
Student ranks applicable
2nd year undergraduate
3rd year undergraduate
Masters
Student qualifications

Skill that would be helpful but not necessary include: 

  • Some coding experience (R, Matlab, Python) would be helpful but not required
  • Photography experience (for dissection imaging)
  • Dissection experience
  • Adobe Illustrator or a similar software

Skills that are necessary include: 

  • Experience using Excel
  • Comfortability with computers
  • Comfortability with handling animal specimens 

Helpful academic background includes: 

  • A course in ecology or evolution (ex. Bio 14)
  • Physics
  • Biostatistics
  • Anatomy
  • Physiology 

Physical qualifications

There are no physical qualifications for this project other than working at a computer or sitting during dissection for extended periods of time. 

Hours per week
5-10hrs/wk
Compensation
Unpaid - Course Credit
Number of openings
1
Techniques learned

Students will gain experience with the following methods, software, and techniques: 

  • Quantitative analysis of CT scan data using an open source program called 3D Slicer.
  • Experience working in the image analysis software FIJI
  • Coding in R (for statistics, figure making)
  • Experience in dissection
  • Knowledge of fish anatomy (bones, muscles, ect)
  • Experience in digital anatomical illustration
  • Data management
  • Specimen photography
  • Experience in Blender/Mesh Lab for 3D renders of muscle and bony anatomy
  • Fish husbandry and collection
Project start
Summer 2025
This project will use an Expectations and Structure agreement.
Expectations and Structure
Expectations and Structure

This project is designed to foster a collaborative and intellectually engaging environment where both the mentor and student contribute to advancing biomechanical studies of swimming in fishes. Students are expected to commit 10 or more hours per week (to be agreed upon) to independent work, including lab setup and experiments, data analysis, and literature review. 

Students must maintain good records of their experiments and data analysis on LabArchives and ensure that all data are documented and backed up. There will be training in best practices for record keeping and data management.

Students will be expected to contribute to lab maintenance, which will include cleaning and organizing in the lab and contributing to caring for the fish.

Students are expected to attend and participate in weekly summer lab meetings (time to be determined), which will include paper discussions, guest speakers, workshops, and occasional field trips. Regular weekly meetings (either in-person or virtual) will be scheduled to discuss progress, troubleshoot challenges, and set goals for the following week. In addition to these meetings, students should maintain consistent communication via Slack for quick updates and questions.

Contact Information:
Mentors
Olivia.Hawkins@tufts.edu
Graduate Student
Eric.Tytell@tufts.edu
Name of project director or principal investigator
Eric Tytell
Email address of project director or principal investigator
eric.tytell@tufts.edu
1 sp. | 0 appl.
Hours per week
5-10hrs/wk
Project categories
Physiology, Neurobiology, and Biomechanics